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RCSBProteinDataBank | PDBx/mmCIF format - Not your parents’ legacy PDB format @RCSBProteinDataBank | Uploaded 1 year ago | Updated 3 hours ago
This course is designed to help users understand the basics of PDBx/mmCIF data dictionary and file format that underpin the archiving of experimentally determined three-dimensional biostructures in the PDB.

After completing of this course, you will be able to use software tools for generating, editing, and visualizing PDBx/mmCIF files, understand PDBx/mmCIF dictionary extensions (including ModelCIF for computed structure models), and parse data from PDBx/mmCIF files for your research.

Access the full course and supplementary materials at https://pdb101.rcsb.org/train/training-events/mmcif.

Presenter:
Ezra Peisach, Scientific Software Developer/PDBx mmCIF Dictionary Manager
PDBx/mmCIF format - Not your parents’ legacy PDB formatComputed Structure Models: Confidence Levels in 3D PredictionsPika the p21: Protector of the Cell CycleIntroduction to Python and to Jupyter NotebooksComputed Structure Models: Visualization, Validation, and AlignmentsLeveraging RCSB PDB APIs for Bioinformatics Analyses and Machine LearningIntroduction to Mol* (MolStar) Molecular Graphics SystemInsulin BiosynthesisNonlinear regression: Creating the Pandas DataFrameExtracting data from mmCIF files using the Biopython libraryBreast Cancer Chess Championship: Trastuzumab vs HER2 ReceptorMolecular Machinery: A Tour

PDBx/mmCIF format - Not your parents’ legacy PDB format @RCSBProteinDataBank