RCSBProteinDataBank | Computed Structure Models: Confidence Levels in 3D Predictions @RCSBProteinDataBank | Uploaded 1 year ago | Updated 3 hours ago
Presenter:
Chenghua Shao
Scientific Software Developer/KPI Evaluator
RCSB PDB/Rutgers

In August 2022, the RCSB PDB enabled access to ~1 million Computed Structure Models (CSMs) from AlphaFoldDB and RoseTTAFold in addition to the ~200,000 experimentally-determined PDB structures on the RCSB.org website.

On September 22, 2022 a Virtual Crash Course was held to inform the RCSB.org users how to search, visualize, and analyze CSMs alongside experimentally-determined PDB structures using the custom-developed RCSB PDB tools.

Pika the p21: Protector of the Cell Cycle

Introduction to Python and to Jupyter Notebooks

Computed Structure Models: Visualization, Validation, and Alignments

Leveraging RCSB PDB APIs for Bioinformatics Analyses and Machine Learning

Introduction to Mol* (MolStar) Molecular Graphics System

Nonlinear regression: Creating the Pandas DataFrame

Extracting data from mmCIF files using the Biopython library

Breast Cancer Chess Championship: Trastuzumab vs HER2 Receptor

Menacing Mutations: Examining the Role of the RAS Oncogene in Cancer Development

Computed Structure Models: Confidence Levels in 3D Predictions @RCSBProteinDataBank