@RCSBProteinDataBank
@RCSBProteinDataBank
RCSBProteinDataBank | Leveraging RCSB PDB API's for Bioinformatics Analyses and Machine Learning @RCSBProteinDataBank | Uploaded 10 months ago | Updated 3 hours ago
The lectures in this session will introduce you to the two main RCSB PDB APIs: Data API and Search API.

Please visit the PDB-101 Training Course page for access to the slides, documents, and other training materials: https://pdb101.rcsb.org/train/training-events/api

Timestamps:
00:00:00 Welcome
00:07:55 Introduction to RCSB PDB APIs and data schemas
00:37:59 Data API
01:09:10 Search API
01:41:36 Search and Data API hands-on teaser

After completion of this session, you will

* Understand the data structure and its relation to the PDBx/mmCIF dictionary and external data
* Become familiarized with the two available interfaces in the Data API: GraphQL and REST
* Write search queries with one or multiple search conditions to find PDB identifiers
* Be familiar with search services beyond text: sequence, seqmotif, structure, chemical, strucmotif
* Become acquainted with the Python client for Search API
Leveraging RCSB PDB APIs for Bioinformatics Analyses and Machine LearningIntroduction to Mol* (MolStar) Molecular Graphics SystemInsulin BiosynthesisNonlinear regression: Creating the Pandas DataFrameExtracting data from mmCIF files using the Biopython libraryBreast Cancer Chess Championship: Trastuzumab vs HER2 ReceptorMolecular Machinery: A TourMenacing Mutations: Examining the Role of the RAS Oncogene in Cancer DevelopmentMaking the Best use of Protein Structure Data in KBase and PDBKBase Apps for Protein Structure Data Communication and Integration with RCSB PDBHow do I find models? Simple Searching Case Study and intro to Structure Summary PagesExploring the PD-1/PD-L1 pathway using Data, Tools, and Resources from RCSB.org

Leveraging RCSB PDB API's for Bioinformatics Analyses and Machine Learning @RCSBProteinDataBank