RCSBProteinDataBank | Computed Structure Models: Visualization, Validation, and Alignments @RCSBProteinDataBank | Uploaded 1 year ago | Updated 3 hours ago
Presenter:
Sebastian Bittrich
Scientific Software Developer
RCSB PDB/UCSD

In August 2022, the RCSB PDB enabled access to ~1 million Computed Structure Models (CSMs) from AlphaFoldDB and RoseTTAFold in addition to the ~200,000 experimentally-determined PDB structures on the RCSB.org website.

On September 22, 2022 a Virtual Crash Course was held to inform the RCSB.org users how to search, visualize, and analyze CSMs alongside experimentally-determined PDB structures using the custom-developed RCSB PDB tools.

Leveraging RCSB PDB APIs for Bioinformatics Analyses and Machine Learning

Introduction to Mol* (MolStar) Molecular Graphics System

Nonlinear regression: Creating the Pandas DataFrame

Extracting data from mmCIF files using the Biopython library

Breast Cancer Chess Championship: Trastuzumab vs HER2 Receptor

Menacing Mutations: Examining the Role of the RAS Oncogene in Cancer Development

Making the Best use of Protein Structure Data in KBase and PDB

KBase Apps for Protein Structure Data Communication and Integration with RCSB PDB

How do I find models? Simple Searching Case Study and intro to Structure Summary Pages

Computed Structure Models: Visualization, Validation, and Alignments @RCSBProteinDataBank