RCSBProteinDataBank | Understanding PDB Validation: Which experimental structures should I rely on? @RCSBProteinDataBank | Uploaded May 2024 | Updated October 2024, 4 days ago.
Learn about primary PDB structure quality metrics, including those in the validation slider graphic; how PDB structure quality varies across the archive; and identify good structure(s) for research from RCSB.org.
Presentation slides and more information at pdb101.rcsb.org/train/training-events/validation
Video sections:
Introduction:
0:00 Protein Data Bank (PDB) and Quality Variation of Structures
Understanding PDB Validation: Which experimental structures should I rely on:
5:38 wwPDB Validation Overview
13:22 Validation of chemical geometry for PDB structures determined by all methods
17:08 Validation of macromolecular crystallography (MX) structures
23:27 Validation of 3D electron microscopy (3DEM) structures
29:41 RCSB.org access to validation reports and quality review in 3D
31:44 RCSB.org structure confidence review in 3D
33:53 RCSB.org interactive ligand quality review
43:47 Q&A
Learn about primary PDB structure quality metrics, including those in the validation slider graphic; how PDB structure quality varies across the archive; and identify good structure(s) for research from RCSB.org.
Presentation slides and more information at pdb101.rcsb.org/train/training-events/validation
Video sections:
Introduction:
0:00 Protein Data Bank (PDB) and Quality Variation of Structures
Understanding PDB Validation: Which experimental structures should I rely on:
5:38 wwPDB Validation Overview
13:22 Validation of chemical geometry for PDB structures determined by all methods
17:08 Validation of macromolecular crystallography (MX) structures
23:27 Validation of 3D electron microscopy (3DEM) structures
29:41 RCSB.org access to validation reports and quality review in 3D
31:44 RCSB.org structure confidence review in 3D
33:53 RCSB.org interactive ligand quality review
43:47 Q&A
