Streamlining Access to RCSB PDB APIs with Python @RCSBProteinDataBank
Streamlining Access to RCSB PDB APIs with Python  @RCSBProteinDataBank
Uploaded April 2025 | Updated September 2026, 2 weeks ago
This webinar introduces and demonstrates usage of the rcsb-api Python package which enables researchers to easily interact with RCSB PDB Search and Data API services. Using this toolkit, users can seamlessly integrate search and data retrieval tasks into computational workflows for custom analyses.

Key Takeaways
This webinar will benefit researchers in bioinformatics, structural biology, and data science who want to
• Automate advanced search and data retrieval from RCSB.org
• Learn the fundamentals of RCSB PDB’s Search and Data APIs and use-cases
• Use Python for searching and fetching macromolecular structure data from RCSB.org
• Integrate RCSB PDB APIs into data workflows using a simplified Python interface

Video guide:
00:00 Introduction to RCSB.org APIs and the rcsb-api Python package
29:08 Hands-on demo of the Python toolkit using Google Colab Notebook

Presentation slides, links, and other materials are available on PDB-101 (pdb101.rcsb.org/train/training-events/apis-python)

This webinar was hosted by RCSB PDB and Rutgers Institute for Quantitative Biomedicine on March 24, 2025
Streamlining Access to RCSB PDB APIs with PythonPDB50 at BPS: Helen M. BermanCreate a Transparent Surface  for H5N1 Influenza A Polymerase in Complex With Human ANP32PDB-101: Bringing Proteins to Life for Science EducatorsPDB50 at BPS: Linda ColumbusPython Scripting for Molecular Docking: Docking PreparationGregory Petsko | Truth Sometimes Triumphs: A History of Structural EnzymologyPDB50 at the ACA: Day 2 Introduction, David Rose, University of WaterlooMolecular Machinery: A TourPython Scripting for Molecular Docking: Docking with AutoDock VinaPDB50 at the ACA: Day 1 | Rafael M. Couñago, SGC/UNICAMP, BrazilDay 2 | Session 4 | Chair: Shoshana Wodak
RCSBProteinDataBank |

Streamlining Access to RCSB PDB APIs with Python

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