Uploaded January 2019 | Updated September 2026, 1 hour ago
How do you model an active site, when all you have is a PDB file? Dr. KP shows you time-saving techniques and commands for AS modeling in PyMOL.
Download PyMOL for free: pymol.org/edu/?q=educational
Commands used in this video: docs.google.com/document/d/1y9-NepfpCSoRztepZzd4KzmIVvcWHCN2ILG7dg0SZ30/edit?usp=sharing
PDB ID: 2ace
Raves, M. L., Harel, M., Pang, Y. P., Silman, I., Kozikowski, A. P., & Sussman, J. L. (1997). Structure of acetylcholinesterase complexed with the nootropic alkaloid,(–)-huperzine A. Nature structural biology, 4(1), 57-63.
How do you model an active site, when all you have is a PDB file? Dr. KP shows you time-saving techniques and commands for AS modeling in PyMOL.
Download PyMOL for free: pymol.org/edu/?q=educational
Commands used in this video: docs.google.com/document/d/1y9-NepfpCSoRztepZzd4KzmIVvcWHCN2ILG7dg0SZ30/edit?usp=sharing
PDB ID: 2ace
Raves, M. L., Harel, M., Pang, Y. P., Silman, I., Kozikowski, A. P., & Sussman, J. L. (1997). Structure of acetylcholinesterase complexed with the nootropic alkaloid,(–)-huperzine A. Nature structural biology, 4(1), 57-63.
