Looking Glass Universe | how AlphaFold *actually* works @LookingGlassUniverse | Uploaded April 2024 | Updated October 2024, 1 week ago.
AlphaFold paper: nature.com/articles/s41586-021-03819-2
The original paper about transformers (the technology behind GPT), Attention Is All You Need: arxiv.org/abs/1706.03762
*Helpful videos and blogposts about attention and AlphaFold*
3blue1brown's video on transformers: youtu.be/eMlx5fFNoYc?si=V5k3r6sc5NSMhFt0
Nazim Bouatta's talk on AlphaFold: youtu.be/ri39B0Voujc?si=JpFOlxrVIm0wfmsZ
Simon Kohl's talk on AlphaFold, (he is one of the coauthor's of the algorithm): youtu.be/tTN0MM2CQLU?si=x7I5muFg0lm0VDy3
A very thorough blogpost about the algorithm from UV-Bio: https://www.uvio.bio/alphafold-architecture/
The Openfold github + paper: github.com/aqlaboratory/openfold + biorxiv.org/content/10.1101/2022.11.20.517210v2.full.pdf
AlphaFold paper: nature.com/articles/s41586-021-03819-2
The original paper about transformers (the technology behind GPT), Attention Is All You Need: arxiv.org/abs/1706.03762
*Helpful videos and blogposts about attention and AlphaFold*
3blue1brown's video on transformers: youtu.be/eMlx5fFNoYc?si=V5k3r6sc5NSMhFt0
Nazim Bouatta's talk on AlphaFold: youtu.be/ri39B0Voujc?si=JpFOlxrVIm0wfmsZ
Simon Kohl's talk on AlphaFold, (he is one of the coauthor's of the algorithm): youtu.be/tTN0MM2CQLU?si=x7I5muFg0lm0VDy3
A very thorough blogpost about the algorithm from UV-Bio: https://www.uvio.bio/alphafold-architecture/
The Openfold github + paper: github.com/aqlaboratory/openfold + biorxiv.org/content/10.1101/2022.11.20.517210v2.full.pdf
