Uploaded January 2023 | Updated September 2026, 2 weeks ago
A classical disconnection approach for a retrosynthesis of this molecule with a benzyl protecting group on a base-sensitive aldol product.
More retrosynthesis videos available at this playlist:
youtube.com/playlist?list=PLavaRHHaRimVhyZD79H8g08cfhxrZMcB1
Retrosynthetic analysis identifies disconnection of the benzyl ether as a protecting group for the hydroxyl group of an aldol product. A Williamson ether synthesis is not possible to form this C-O bond due to a risk of retro-aldol fragmentation under strongly basic conditions. A more mild trichloroacetimidate reagent (TCA) can be used to benzylate under mild acidic conditions instead.
The next disconnection will come from identifying a 1,3-difunctional relationship (1,3-diX) which is best formed by enolate chemistry using an aldol reaction. The lithium enolate formed by reaction of ethyl acetate with LDA is appropriate for this transformation.
The aldehyde required for this aldol reaction also has a 1,3-difunctional relationship between the aldehyde carbonyl and an alkene. To use enolate chemistry and aldol reactions again, a functional group interconversion must be used. The alkene can be formed by elimination reaction from an alcohol. An E2 elimination reaction can be done by first converting the hydroxyl group into a tosylate leaving group, and then treating the tosylate species with a non-nucleophilic base such as potassium tert-butoxide (KOtBu).
The final intermediate in the retrosynthesis can also be disconnected by aldol chemistry back to isobutyraldehyde. Isobutyraldehyde will be treated with a reversible base to cause the aldol self-reaction between the enolate and the aldehyde forms of this molecule, as nucleophile and electrophile, respectively.
#organicchemistry #retrosynthesis #chemistry
A classical disconnection approach for a retrosynthesis of this molecule with a benzyl protecting group on a base-sensitive aldol product.
More retrosynthesis videos available at this playlist:
youtube.com/playlist?list=PLavaRHHaRimVhyZD79H8g08cfhxrZMcB1
Retrosynthetic analysis identifies disconnection of the benzyl ether as a protecting group for the hydroxyl group of an aldol product. A Williamson ether synthesis is not possible to form this C-O bond due to a risk of retro-aldol fragmentation under strongly basic conditions. A more mild trichloroacetimidate reagent (TCA) can be used to benzylate under mild acidic conditions instead.
The next disconnection will come from identifying a 1,3-difunctional relationship (1,3-diX) which is best formed by enolate chemistry using an aldol reaction. The lithium enolate formed by reaction of ethyl acetate with LDA is appropriate for this transformation.
The aldehyde required for this aldol reaction also has a 1,3-difunctional relationship between the aldehyde carbonyl and an alkene. To use enolate chemistry and aldol reactions again, a functional group interconversion must be used. The alkene can be formed by elimination reaction from an alcohol. An E2 elimination reaction can be done by first converting the hydroxyl group into a tosylate leaving group, and then treating the tosylate species with a non-nucleophilic base such as potassium tert-butoxide (KOtBu).
The final intermediate in the retrosynthesis can also be disconnected by aldol chemistry back to isobutyraldehyde. Isobutyraldehyde will be treated with a reversible base to cause the aldol self-reaction between the enolate and the aldehyde forms of this molecule, as nucleophile and electrophile, respectively.
#organicchemistry #retrosynthesis #chemistry

![Sumatriptan Synthesis Explained - Organic Chemistry (Indoles, Diazotation)
A quick run-through of key ideas when planning on making indole ring systems in organic chemistry, showcased in the synethesis of sumatriptan.
I go over the mechanisms of the Fischer indole synthesis and a diazotation reaction.
#organicchemistry #chemistry #synthesis
Sumatriptan was released by Glaxo in the 1990s as a pharmaceutical agent for the treatment for migraines, after the standard medicinal chemistry exploration. The large-scale industrial synthesis involves a Fischer indole disconnection as its key step of making the bicyclic aromatic rings system. The mechanism involves a [3,3] sigmatropic rearrangement (a pericyclic reaction) in which a weak nitrogen-nitrogen bond is broken at the expense of big thermodynamic benefits of the generation of aromaticity. The indole system can be seen to be aromatic by counting electrons and showing that it conforms to Huckels rule.
The formation of the the N-N bond is done by a diazotation reaction, and goes through an intermediate diazonium ion. This is a common reaction for forming new bonds directly between two nitrogen atoms and uses nitrous acid (HONO) reacted with an (aryl) amine. These diazonium ions can also be used as intermediates with a really good leaving group - being nitrogen gas - in other types of substitution reactions. The diazonium ion also is prone to oxidative addition type reaction mechanisms on interaction with appropriate metals.
The starting materials for the industrial synthesis come from classic nitration conditions using nitric acid and sulfuric acid. The para selectivity of nitration can be explained mainly from the stabilisation of an intermediate carbocation.
The other aldehyde starting material is easier to handle on a large scale when masked as the dimethyl acetal - this, for example, make it less sensitive to hydrate formation with water and therefore also unintended oxidation under atmospheric conditions. The dimethyl acetal collapses under the Fischer indole reaction conditions, being aqueous acid, by the usual SN1 type process.
There are other alternative retrosynthesis ideas that can be used for this molecule, but most will involve using the central indole core as the focus. There are many alternative indole formation mechanisms and processes, that each might have their merit on occasion. The Fischer indole is probably the most archetypal disconnection, and it is certainly one of the most traditional and well-precedented. When using other carbonyl compounds in this type of mechanism, care must be taken for the regioselectivity for the enamine formation - under most circumstances this is under thermodynamic control. Disconnections therefore need to be taken carefully if the indole ring has more substitution, particularly if there are groups at the 2 and 3 positions (these are on the pyrrole type ring component of the indole). Sumatriptan Synthesis Explained - Organic Chemistry (Indoles, Diazotation)](https://i.ytimg.com/vi/v2lSd253nwU/mqdefault.jpg)




