Uploaded May 2021 | Updated September 2026, 2 weeks ago
Here is a workflow for PDFs that will make you actually want to read research papers, even if you're just an amateur researcher. If you love learning but you don't have to worry much about overly rigorous academic citations, reference managers like Zotero can still be useful for notetaking. Let's find out how!
GUEST
Eleanor Konik studied ancient philosophy and religion before graduating law school in 2011. Now, she teaches world history and spends the bits of time left over writing books that bring ancient history β and magic β to life. She regularly blogs about ancient civilizations and mythology.
π Eleanor's amazingly awesome website: eleanorkonik.com
π Research Rabbit referral code: l17JvlK
βββ
THINGS TO DOWNLOAD
1π Zotero: zotero.org
2π Zotfile: zotfile.com
3π Better Bibtex: https://retorque.re/zotero-better-bibtex/
4π MD Notes: github.com/argenos/zotero-mdnotes
5π Obsidian: https://obsidian.md/
6π Citations plugin: Install it through the Obsidian community plugins
βββ
LEARN EVEN MORE ABOUT ZOTERO WORKING WITH OBSIDIAN
π Argentina's in-depth video tutorial on Zotero 101: youtube.com/watch?v=9SzGxZbqyqc
π Cat's in-depth tutorial on Zotero Β» zotfile Β» mdnotes Β» obsidian Β» dataview Workflow: https://forum.obsidian.md/t/zotero-zotfile-mdnotes-obsidian-dataview-workflow/15536
π Free Weekly Creative Productivity Insights: linkingyourthinking.com/learn-more-now?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
π MASTER OBSIDIAN: linkingyourthinking.com/obsidian-flight-school?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
πΊ MASTER KNOWLEDGE: linkingyourthinking.com/workshop?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
π GET IDEAVERSE (Formerly the LYT Kit): start.linkingyourthinking.com/ideaverse-for-obsidian?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
π MASTER READING: linkingyourthinking.com/how-to-work-a-book?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
πΊ SUBSCRIBE TO THIS CHANNEL Β» youtube.com/channel/UC85D7ERwhke7wVqskV_DZUA?sub_confirmation=1
00:00 - Start
00:27 - Intro
01:15 - Eleanorβs background with Zotero
04:47 - References with summaries
06:02 - How Eleanor uses Dataview
07:47 - Zotero intro - cite key
09:07 - Cite Key with Zotero Example
10:31 - What does the citations plugin do?
13:27 - Haute Couture in the Bronze age
14:45 - The importance of not over capturing metadata
15:38 - What is important for Eleanor
16:24 - You can tell it to give you the location after every single, block quote
17:31 - Adding Eleanorβs headers
18:23 - how you can change the citations plugin and the MD notes template
20:55 - Placeholders - all the things you could have
22:26 - The three plugins you need in Zotero
23:03 - The cool thing that Zotero does
24:01 - Research Rabbit
27:21 - What Zotero is for
30:49 - Zotero is not just for academic papers
31:26 - On using Youtube as an educational resource
33:44 - Finding available PDFs
36:21 - Zotfile
36:32 - Assigning renaming rules
37:46 - What Eleanor does with her PDFs in Obsidian
39:50 - Embedding a PDF in Obsidian
40:25 - How Eleanor uses PDFs in Obsidian
41:26 - Eleanorβs walkthrough on her process for annotating PDFs
43:35 - Extracting the annotations
48:54 - MD Notes
52:04 - A sample of what Eleanor has already processed
52:54 - The summary
53:15 - What Eleanor learned about the purple dye in the Eastern Mediterranean
56:26 - Another interesting thing Eleanor learned from this: Textile creation
57:07 - What Eleanor used before Obsidian
π¦ TWEET: twitter.com/NickMilo
π READ: medium.com/@nickmilo22/my-pkm-story-3763985b7a3e
π¬ LEARN OBSIDIAN: youtu.be/QgbLb6QCK88
πΏ DOWNLOAD OBSIDIAN: https://obsidian.md/
π© EMAIL: support@linkingyourthinking.com
π· TAGS: #Obsidian #obsidianapp #Obsidiannotetakingapp #LinkingYourThinking
π SPECIAL MENTION
π Big thanks to Jonathan and Jason of counterpart.work for the logo design.
Here is a workflow for PDFs that will make you actually want to read research papers, even if you're just an amateur researcher. If you love learning but you don't have to worry much about overly rigorous academic citations, reference managers like Zotero can still be useful for notetaking. Let's find out how!
GUEST
Eleanor Konik studied ancient philosophy and religion before graduating law school in 2011. Now, she teaches world history and spends the bits of time left over writing books that bring ancient history β and magic β to life. She regularly blogs about ancient civilizations and mythology.
π Eleanor's amazingly awesome website: eleanorkonik.com
π Research Rabbit referral code: l17JvlK
βββ
THINGS TO DOWNLOAD
1π Zotero: zotero.org
2π Zotfile: zotfile.com
3π Better Bibtex: https://retorque.re/zotero-better-bibtex/
4π MD Notes: github.com/argenos/zotero-mdnotes
5π Obsidian: https://obsidian.md/
6π Citations plugin: Install it through the Obsidian community plugins
βββ
LEARN EVEN MORE ABOUT ZOTERO WORKING WITH OBSIDIAN
π Argentina's in-depth video tutorial on Zotero 101: youtube.com/watch?v=9SzGxZbqyqc
π Cat's in-depth tutorial on Zotero Β» zotfile Β» mdnotes Β» obsidian Β» dataview Workflow: https://forum.obsidian.md/t/zotero-zotfile-mdnotes-obsidian-dataview-workflow/15536
π Free Weekly Creative Productivity Insights: linkingyourthinking.com/learn-more-now?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
π MASTER OBSIDIAN: linkingyourthinking.com/obsidian-flight-school?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
πΊ MASTER KNOWLEDGE: linkingyourthinking.com/workshop?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
π GET IDEAVERSE (Formerly the LYT Kit): start.linkingyourthinking.com/ideaverse-for-obsidian?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
π MASTER READING: linkingyourthinking.com/how-to-work-a-book?utm_source=youtube&utm_medium=social&utm_campaign=use_zotero_with_obsidian
πΊ SUBSCRIBE TO THIS CHANNEL Β» youtube.com/channel/UC85D7ERwhke7wVqskV_DZUA?sub_confirmation=1
00:00 - Start
00:27 - Intro
01:15 - Eleanorβs background with Zotero
04:47 - References with summaries
06:02 - How Eleanor uses Dataview
07:47 - Zotero intro - cite key
09:07 - Cite Key with Zotero Example
10:31 - What does the citations plugin do?
13:27 - Haute Couture in the Bronze age
14:45 - The importance of not over capturing metadata
15:38 - What is important for Eleanor
16:24 - You can tell it to give you the location after every single, block quote
17:31 - Adding Eleanorβs headers
18:23 - how you can change the citations plugin and the MD notes template
20:55 - Placeholders - all the things you could have
22:26 - The three plugins you need in Zotero
23:03 - The cool thing that Zotero does
24:01 - Research Rabbit
27:21 - What Zotero is for
30:49 - Zotero is not just for academic papers
31:26 - On using Youtube as an educational resource
33:44 - Finding available PDFs
36:21 - Zotfile
36:32 - Assigning renaming rules
37:46 - What Eleanor does with her PDFs in Obsidian
39:50 - Embedding a PDF in Obsidian
40:25 - How Eleanor uses PDFs in Obsidian
41:26 - Eleanorβs walkthrough on her process for annotating PDFs
43:35 - Extracting the annotations
48:54 - MD Notes
52:04 - A sample of what Eleanor has already processed
52:54 - The summary
53:15 - What Eleanor learned about the purple dye in the Eastern Mediterranean
56:26 - Another interesting thing Eleanor learned from this: Textile creation
57:07 - What Eleanor used before Obsidian
π¦ TWEET: twitter.com/NickMilo
π READ: medium.com/@nickmilo22/my-pkm-story-3763985b7a3e
π¬ LEARN OBSIDIAN: youtu.be/QgbLb6QCK88
πΏ DOWNLOAD OBSIDIAN: https://obsidian.md/
π© EMAIL: support@linkingyourthinking.com
π· TAGS: #Obsidian #obsidianapp #Obsidiannotetakingapp #LinkingYourThinking
π SPECIAL MENTION
π Big thanks to Jonathan and Jason of counterpart.work for the logo design.





![Obsidian for Beginners: 8 Key Settings (3/6) β How to Use the Obsidian App for Notes
Build your own thinking partner with superpowers - Linking Your AI: https://www.linkingyourthinking.com/linking-your-ai?utm_source=youtube&utm_medium=social&utm_campaign=videolibrary&utm_content=description
This is lesson 3. The Obsidian app course for beginners continues. In this video, youll learn the 8 most important settings in the Obsidian app for note-taking as a complete beginner. Want to Know More? Click Show More β¬οΈ
π OBSIDIAN FLIGHT SCHOOL
Become an expert Obsidian pilot. Fly around your knowledge. Train and improve your skills in Obsidian Flight School.
»» https://www.linkingyourthinking.com/obsidian-flight-school?utm_source=youtube&utm_medium=social&utm_campaign=obsidian_for_beginners_3
πΊ LYT WORKSHOP
Build your custom PKM system. Take your thinking to the next level. Join the next LYT Workshop.
»» https://www.linkingyourthinking.com/workshop?utm_source=youtube&utm_medium=social&utm_campaign=obsidian_for_beginners_3
π GET IDEAVERSE (Formerly the LYT Kit)
This starter kit is designed to get you immediately hands-on with ways to manage your digital notes. Experiment. Learn by doing. See what methods work for you.
»» https://www.linkingyourthinking.com/join/ideaverse-lite?utm_source=youtube&utm_medium=social&utm_campaign=obsidian_for_beginners_3
π DOWNLOAD OBSIDIAN
»» https://obsidian.md/
β³ TIMESTAMPS
[00:00-01:07] - What Youll Learn in This Video
[01:13] - Finding and Exploring the Settings Icon
[01:49] - 1 - Starting with the Editor Menu
[02:09] - 2 - Go to the Plug-in Menu
[02:22] - 2.1 - Activate Tag Pane
[02:30] - 2.2 - Activate Page Preview
[02:37] - 2.3 - Activate Starred Notes
[02:42] - Demo on Tag Pane
[03:12] - Demo on Starred Notes
[03:56] - 3 - Go to the File Settings
[03:59] - 3.1 - Decide where your deleted files will go
[04:08] - Demo on Systems Trash
[04:43] - The Most Important Setting to Activate
[04:48] - Demo on Updating Internal Links
[05:35] - Go to Appearance
[05:44] - What we will cover in the next videos
[06:08] - Explore the Settings but Dont forget to Write, Think and Link
π¬ Other Video Lessons in the Free Note-Taking Course
β¦ How to Get Started with the Obsidian App for Note-Taking for Complete Beginners
Lesson 1: https://youtu.be/QgbLb6QCK88
β¦The 6 Most Important Keys to Typing in Markdown
Lesson 2: https://youtu.be/bBk2kg8Gm_U
β More Lessons Each Week. Make Sure to Subscribe Here: https://www.youtube.com/channel/UC85D7ERwhke7wVqskV_DZUA?sub_confirmation=1
π¦ CONNECT WITH LINKING YOUR THINKING
β¦ Twitter: https://twitter.com/NickMilo
β¦ Medium: https://medium.com/@nickmilo22
π READ OUR MOST SHARED ARTICLE
https://medium.com/@nickmilo22/why-progressive-summarization-must-die-c2635d1f79f1
π¬ GOT A QUESTION OR VIDEO FEEDBACK/SUGGESTION?
π© Email: support@linkingyourthinking.com
β‘οΈ Send Your Feedback/Suggestions Here: https://bit.ly/2ZCPZOV
π SPECIAL MENTION
Big thanks to Jonathan from Logo Design by counterpart.work
We highly recommend his work!
#Obsidianapp #Obsidiannotetakingapp #LinkingYourThinking Obsidian for Beginners: 8 Key Settings (3/6) β How to Use the Obsidian App for Notes](https://i.ytimg.com/vi/_2z-7D4bQEA/mqdefault.jpg)

![Why Obsidian Will Overtake Roam
Build your own thinking partner with superpowers - Linking Your AI: https://www.linkingyourthinking.com/linking-your-ai?utm_source=youtube&utm_medium=social&utm_campaign=videolibrary&utm_content=description
This video explores why Obsidian will overtake Roam Research and how our tools shape our behavior. Roam is powerful, but its not for everyone. Im also not saying Obsidian is for everyone, but its features are helpful for a certain kind of person who wants to do specific things, especially both connecting AND writing. (more on this in the video!)
π Free Weekly Creative Productivity Insights: https://www.linkingyourthinking.com/learn-more-now?utm_source=youtube&utm_medium=social&utm_campaign=obsidian_will_overtake_roam
π MASTER OBSIDIAN: https://www.linkingyourthinking.com/obsidian-flight-school?utm_source=youtube&utm_medium=social&utm_campaign=obsidian_will_overtake_roam
πΊ MASTER KNOWLEDGE: https://www.linkingyourthinking.com/workshop?utm_source=youtube&utm_medium=social&utm_campaign=obsidian_will_overtake_roam
π GET IDEAVERSE (Formerly the LYT Kit): https://www.linkingyourthinking.com/join/ideaverse-lite?utm_source=youtube&utm_medium=social&utm_campaign=obsidian_will_overtake_roam
π MASTER READING: https://www.linkingyourthinking.com/how-to-work-a-book?utm_source=youtube&utm_medium=social&utm_campaign=obsidian_will_overtake_roam
πΊ SUBSCRIBE TO THIS CHANNEL Β» https://www.youtube.com/channel/UC85D7ERwhke7wVqskV_DZUA?sub_confirmation=1
[00:00] - Introduction
[00:43] - Disclaimer Time
[01:32] - This needs to be said
[01:41] - I love Roam Research, but...
[02:17] - CGP Grey on Roam Research
[03:09] - CGP Grey on the Obsidian app
[04:12] - Outliners vs Writers
[05:36] - How our tools shape us
[06:12] - Example: How Evernote note shaped me
[07:01] - 4 ways these tools are shaping behavior
[08:39] - What Roam is encouraging you
[10:29] - Hidden Friction in Roam
[11:22] - A simple solution for Roam users
[11:41] - MOCs = Maps of Content
[12:18] - Why Obsidian?
[13:29] - Arthur Schopenhauer agrees
[14:28] - Why not both?
[15:25] - 5 More reasons why Obsidian will overtake Roam
[16:49] - Pre-Conclusion
[17:23] - 7 Takeaways
[18:47] - Become a note maker
[19:07] - Linking Your Thinking Workshop
π¦ TWEET: https://twitter.com/NickMilo
π READ: https://medium.com/@nickmilo22/my-pkm-story-3763985b7a3e
π¬ LEARN OBSIDIAN: https://youtu.be/QgbLb6QCK88
πΏ DOWNLOAD OBSIDIAN: https://obsidian.md/
π© EMAIL: support@linkingyourthinking.com
π· TAGS: #Obsidian #obsidianapp #Obsidiannotetakingapp #LinkingYourThinking
π SPECIAL MENTION
π Big thanks to Jonathan and Jason of counterpart.work for the logo design. Why Obsidian Will Overtake Roam](https://i.ytimg.com/vi/_x54XJrECvk/mqdefault.jpg)

![My Complete Obsidian Masterclass (FULL GUIDE + SETUP)
Learn Obsidian, the notes app: from beginner to full workspace in 1 video.
GET UPDATES - Ill send you every major visual + feature change (& future ones): https://www.linkingyourthinking.com/join/obsidian-updates?utm_source=youtube&utm_medium=social&utm_campaign=my_complete_obsidian_masterclass
This is a compilation of my Obsidian for Beginners video series - viewed nearly 4 million times - in one video.
Mastered everything here? Watch this playlist next to take things to the next level: https://www.youtube.com/watch?v=lqrzxfZD_hc&list=PL3NaIVgSlAVLSspDBo4czhFAisttDEOCi&index=1
π GET MY PRO OBSIDIAN SETUP: https://www.linkingyourthinking.com/ideaverse-pro?utm_source=youtube&utm_medium=social&utm_campaign=my_complete_obsidian_masterclass
π± GET MY BEGINNER OBSIDIAN SETUP: https://start.linkingyourthinking.com/ideaverse-for-obsidian?utm_source=youtube&utm_medium=social&utm_campaign=my_complete_obsidian_masterclass
π LEARN OBSIDIAN BASICS: https://www.linkingyourthinking.com/obsidian-flight-school?utm_source=youtube&utm_medium=social&utm_campaign=my_complete_obsidian_masterclass
π GET MY BEST IDEAS WEEKLY: https://www.linkingyourthinking.com/newsletter/yt?utm_source=youtube&utm_medium=social&utm_campaign=my_complete_obsidian_masterclass
π DOWNLOAD OBSIDIAN: https://obsidian.md/
00:00 Start the Obsidian Masterclass
00:25 PART 1: Download Obsidian and create your first vault (complete beginner)
01:50 Write your first Markdown note (future-proof your ideas)
03:00 Link your second note with double brackets [[ ]]
04:05 Capture ideas at speed of thought
06:05 Use placeholder links to spark new notes
07:00 Grow your ideas by connecting them
08:05 Unlock backlinks and linked mentions
09:00 Explore the graph view to see your knowledge web
10:35 Watch your notes gain value over time
12:15 PART 2: The 7 Most Important Markdown Essentials in Obsidian
13:35 Build relationships with links and tags
14:45 Highlight what matters with italics and bold
16:20 Organize thoughts with lists and headers (H1βH6)
18:30 Add tags like People, Movie, PKM to filter and connect
20:00 Simplify with numbered lists (formatting that stays minimal)
20:50 PART 3: The 8 Most Important Obsidian Settings
22:00 Activate core plugins (Tag Pane, Page Preview, Starred)
23:35 Manage files and send deleted notes to system trash
24:25 Protect your links with automatic updates (critical!)
26:30 Deep dive - graph view, community themes, styles
33:15 PART 4: The 8 Most Important Obsidian Hotkeys
34:30 Toggle preview and edit with Command E
35:45 Use Quick Switcher (Command O) and global search
36:30 Navigate back and forward with hotkeys
37:50 Create new notes faster (Command N and split panes)
39:00 How to build your own system
39:40 IMPORTANT: Get everyΒ major Obsidian update + visual change
π TAGS: #Obsidian #obsidianapp #Obsidiannotetakingapp #LinkingYourThinking My Complete Obsidian Masterclass (FULL GUIDE + SETUP)](https://i.ytimg.com/vi/a4AyDRpeXwM/mqdefault.jpg)
