JG Science's video: youtu.be/7aofA9xgpD4
CambrianScience
This video will give you the basics of understanding a phylogenetic tree, in case you've been horrifically confused for all my other videos. This is part of a collaboration with JG Science that he reached out about making three years ago, and we have just now got around to finishing, mainly because I've been busy with my master's degree work, which put video-making on the back burner. Normal videos will resume after this.
JG Science's video: youtu.be/7aofA9xgpD4
JG Science's video: youtu.be/7aofA9xgpD4
updated 2 years ago
JG Science's video: youtu.be/7aofA9xgpD4
I hope it was worth the time it took to make. When I started this in April, I was still an undergraduate. Now I'm elderly.
Sources and Additional Reading:
The Difference Between...Rugose, Tabulate and Scleractinian corals
palaeopost.blogspot.com/2016/08/the-difference-betweenrugose-tabulate.html
Different Phanerozoic Reefbuilders
https://www.geol.umd.edu/~jmerck/geol100/lectures/31.html
The ecological evolution of reefs
researchgate.net/publication/234149123_The_ecological_evolution_of_reefs
Permian Reefs and Carbonate Complexes, West Texas
http://sunstar-solutions.com/sunstar/geology/Permian/PermianTX.htm
Guadalupe Mountains National Park
nps.gov/gumo/learn/nature/geologicformations.htm
Introduction to the Geology of the Permian Reef Complex, Guadalupe and Delaware Mountains, New Mexico & West Texas
https://geoinfo.nmt.edu/tour/federal/parks/PermianReef/home.html#genset
The Final Extinction of Trilobites
trilobites.info/lasttrilos.htm
Mass Extinction and their Aftermath [Freshwater Eurypterids]
books.google.com/books?id=06yrErJt_NsC&vq=eurypterid&hl=en
Paleozoogeography of Late Paleozoic and Triassic Malacostraca
jstor.org/stable/2412793?seq=1#metadata_info_tab_contents
"Earth" shrimp ah, real shrimp, really shrimp, is real shrimp...[Badly auto-translated Chinese title]
zhuanlan.zhihu.com/p/55133790
Pygocephalus from the Upper Carboniferous of the Soviet Union
jstor.org/stable/1304160?seq=7#metadata_info_tab_contents
Miscellaneous Late Paleozoic Malacostraca of the Soviet Union [Isopod]
decapoda.nhm.org/pdfs/22275/22275.pdf
Isopoda
http://tolweb.org/Isopoda/6320/1997.08.06
On the Fossil Anaspidacea, with a Revision of the Classification of the Syncarida
jstor.org/stable/pdf/20102484.pdf
Bringing Fossils to Life Through Art [Mantis Shrimp]
fieldmuseum.org/blog/bringing-fossils-life-through-art
Model-based multi-locus estimation of decapod phylogeny and divergence times
decapoda.nhm.org/pdfs/10268/10268.pdf
Latest Permian deep-water ostracods from southwestern Guangxi, South China
researchgate.net/publication/249544857_Latest_Permian_deep-water_ostracods_from_southwestern_Guangxi_South_China
Crustaceans from bitumen clast in Carboniferous glacial diamictite extend fossil record of copepods
nature.com/articles/ncomms1049
Deep-sea benthopelagic calanoid copepods and their colonization of the near-bottom environment
semanticscholar.org/paper/Deep-sea-benthopelagic-calanoid-copepods-and-their-Bradford%E2%80%90Grieve/e5144357ee6ec3847da776d0c944e9bc155fe1a6?p2df
Volcanism, Mass Extinction, and Carbon Isotope Fluctuations in the Middle Permian of China
researchgate.net/publication/234998800_Volcanism_Mass_Extinction_and_Carbon_Isotope_Fluctuations_in_the_Middle_Permian_of_China
The Middle Permian (Capitanian) mass extinction on land and in the oceans
sciencedirect.com/science/article/abs/pii/S001282521000084X
The Capitanian Age of the Guadalupian Epoch: 260 to 266 million years ago
http://palaeos.com/paleozoic/permian/capitanian.html
Restoration of reef ecosystems following the Guadalupian–Lopingian boundary mass extinction: Evidence from the Laibin area, South China
sciencedirect.com/science/article/abs/pii/S0031018217305096
Permian reefs re-examined: extrinsic control mechanisms of gradual and abrupt changes during 40 my of reef evolution
sciencedirect.com/science/article/abs/pii/S0016699502000669
Sources and Additional Reading:
Capitanian (Middle Permian) Extinction:
sciencedirect.com/science/article/abs/pii/S001282521000084X
Early Permian Gap/Extinction:
pubs.geoscienceworld.org/gsa/geology/article-abstract/40/4/339/130877
Permian tetrapod biochronology, correlation and evolutionary events:
sp.lyellcollection.org/content/450/1/405
THE OLDEST THEROCEPHALIANS (THERAPSIDA, EUTHERIODONTIA) AND THE EARLY DIVERSIFICATION OF THERAPSIDA:
onlinelibrary.wiley.com/doi/full/10.1111/j.1475-4983.2008.00784.x
Changes in Permo‐Triassic terrestrial tetrapod ecological representation in the Beaufort Group (Karoo Supergroup) of South Africa:
onlinelibrary.wiley.com/doi/pdf/10.1111/j.1502-3931.2009.00171.x
Reconstructing the diversity of early terrestrial herbivorous tetrapods:
sciencedirect.com/science/article/abs/pii/S0031018212006347
Middle Permian continental biodiversity changes as reflected in the Beaufort Group of South Africa: a bio-and lithostratigraphic review of the Eodicynodon, Tapinocephalus and Pristerognathus assemblage zones:
http://wiredspace.wits.ac.za/handle/10539/14014
High-precision U-Pb CA-TIMS calibration of Middle Permian to Lower Triassic sequences, mass extinction and extreme climate-change in eastern Australian Gondwana:
sciencedirect.com/science/article/abs/pii/S1342937X14002706#f0090
Upper Permian vertebrates and their sedimentological context in the South Urals, Russia:
sciencedirect.com/science/article/abs/pii/S0012825204000911?via%3Dihub
Archaeosyodon:
http://www.kheper.net/evolution/therapsida/Brithopodidae.html#Archaeosyodon
The Origins of the Cochlea and Impedance Matching Hearing in Synapsids:
bioone.org/journals/Acta-Palaeontologica-Polonica/volume-61/issue-2/app.00140.2014/The-Origins-of-the-Cochlea-and-Impedance-Matching-Hearing-in/10.4202/app.00140.2014.full
The original boneheads: histologic analysis of the pachyostotic skull roof in Permian burnetiamorphs (Therapsida: Biarmosuchia):
onlinelibrary.wiley.com/doi/pdf/10.1111/joa.12987
New information on the morphology and stratigraphic range of the mid‐Permian gorgonopsian Eriphostoma microdon Broom, 1911:
onlinelibrary.wiley.com/doi/pdf/10.1002/spp2.1012
The oldest cynodont: new clues on the origin and early diversification of the Cynodontia:
academic.oup.com/zoolinnean/article/149/3/477/2630937
Oxygen isotopes suggest elevated thermometabolism within multiple PermoTriassic therapsid clades:
cdn.elifesciences.org/articles/28589/elife-28589-v1.pdf
Evolutionary Patterns Among Permo-Triassic Therapsids:
annualreviews.org/doi/full/10.1146/annurev.ecolsys.32.081501.114113
A comparison of Late Permian Gondwanan and Laurasian amniote faunas:
sciencedirect.com/science/article/abs/pii/S0899536200000816
Olson's Extinction: The Permian's Dirty Little Secret Die-off:
discovermagazine.com/planet-earth/olsons-extinction-the-permians-dirty-little-secret-die-off
DINOSAUR RENAISSANCE:
tuda.triumf.ca/evolution/articles/scientificamerican0475-58.pdf
I thought this would be an easy video.
Sources and Additional Info:
Prionosuchus:
sciencedirect.com/science/article/pii/S0895981116300104
Mesosaurs:
tandfonline.com/doi/abs/10.1080/08912963.2012.662230
Phytoplankton:
sciencedirect.com/science/article/pii/S0034666713000468
Coelacanthus:
cambridge.org/core/journals/geological-magazine/article/on-the-permian-coelacanth-coelacanthus-granulatus-ag/4572BD0F8CE501B199626BA6B8D50EB0
Helicoprion:
http://www.eartharchives.org/articles/buzzsaw-toothed-leviathans-cruised-the-ancient-seas
Crustaceans:
deepdyve.com/lp/wiley/carboniferous-crustaceans-BQuAU3eelD
Trilobites:
pubs.geoscienceworld.org/jpaleontol/article/79/4/702/83639/first-carboniferous-protaspid-larvae-trilobita
Coleoids:
onlinelibrary.wiley.com/doi/full/10.1111/cla.12131
onlinelibrary.wiley.com/doi/full/10.1111/j.1096-0031.2006.00086.x
ajol.info/index.php/ajms/article/view/66472/54196
Actinopterygians:
pnas.org/content/109/34/13698.full
https://www.geol.umd.edu/~jmerck/geol431/lectures/08osteichthyes.html
Euchondrocephalans:
http://palaeos.com/vertebrates/chondrichthyes/holocephali.html
Sources and Additional Reading:
Origins and Early Evolution of Herbivory in Tetrapods:
sciencedirect.com/science/article/pii/S0169534797012573
The Non-marine Permian:
books.google.com/books?hl=en&lr=&id=EmPvCQAAQBAJ&oi=fnd&pg=PA197&dq=edaphosaurus&ots=h6rHpL_wj6&sig=oGQZDhVF4SWtaoAfAqldEICg6Ug#v=onepage&q=edaphosaurus&f=false
Global Permian Tetrapod Biostratigraphy and Biochronology:
http://sp.lyellcollection.org/content/265/1/65.short
Walchian Conifers:
sciencedirect.com/science/article/pii/S0034666713001450
Caudal automony in Captorhinids:
nature.com/articles/s41598-018-21526-3
The Evolution of Milk Secretion:
cambridge.org/core/journals/animal/article/div-classtitlethe-evolution-of-milk-secretion-and-its-ancient-originsdiv/B4E27A6A394CB0C53F1CF4FD6B247409
Tetrapod Bioenergetics:
link.springer.com/chapter/10.1007/978-3-642-87810-7_21
Varanopid Scales:
link.springer.com/article/10.1007%2Fs12542-018-0405-9
Synapsid Homologies:
http://tolweb.org/notes/?note_id=466
Varanopid Parental Care:
researchgate.net/publication/5992898_A_mixed-age_classed_%27pelycosaur%27_aggregation_from_South_Africa_Earliest_evidence_of_parental_care_in_amniotes
Dinosaur Renaissance:
jstor.org/stable/24949774?seq=8#metadata_info_tab_contents
Diversity of Early Herbivorous Tetrapods:
sciencedirect.com/science/article/pii/S0031018212006347
Diadectid ankles:
http://www.bioone.org/doi/abs/10.1666/0022-3360%282003%29077%3C0172%3AHOTAAS%3E2.0.CO%3B2
Sources and Additional Info:
http://discovermagazine.com/2012/nov/04-into-the-permian-woods
sciencedirect.com/science/article/pii/S0034666701000458
annualreviews.org/doi/full/10.1146/annurev.earth.29.1.461#_i3
bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-016-0634-z
http://steurh.home.xs4all.nl/engplant/eblad3.html
http://www.pnas.org/content/early/2012/02/14/1115076109
sciencedirect.com/science/article/pii/S0034666799000330
http://www.bioone.org/doi/abs/10.2110/palo.2011.p11-112r
en.wikipedia.org/wiki/Meganeuropsis
en.wikipedia.org/wiki/Gerobatrachus
en.wikipedia.org/wiki/Limnoscelis
http://palaeos.com/metazoa/mollusca/gastropoda/overview.html
sciencedaily.com/releases/2018/02/180207090142.htm
https://www.journals.uchicago.edu/na101/home/literatum/publisher/uchicago/journals/content/jg/2002/jg.2002.110.issue-1/324203/production/images/large/fg2a.jpeg
http://palaeos.com/paleozoic/permian/cisuralian.html
Permian phytogeography:
https://www.journals.uchicago.edu/doi/abs/10.1086/324203
Here's to five years since my first video on this channel back on Pi Day 2013. I'd like to thank all those who stuck with me.
Sources and additional reading:
dsabs.harvard.edu/abs/2008Sci...322...64H
http://www.stratigraphy.org/index.php/ics-chart-timescale
en.wikipedia.org/wiki/Blattoptera
http://mem.lyellcollection.org/content/12/1/363
livescience.com/43219-permian-period-climate-animals-plants.html
nps.gov/gumo/planyourvisit/upload/Permian-Reef-Trail-Brochure_FINAL.pdf
I promise the Permian videos won't take 3 years to make.
Additional Reading:
http://www.sciencedirect.com/science/article/pii/S0040195113001479
http://palaeos.com/earth/paleogeography/pangea.html
http://www.scotese.com/newpage4.htm
news.nationalgeographic.com/news/2008/09/080905-pangaea-suction.html
http://www.sciencedirect.com/science/article/pii/S0031018214005409
http://phl.upr.edu/projects/visual-paleo-earth
pubs.geoscienceworld.org/geology/article-lookup/38/12/1079
Carboniferous Forest Simulator:
http://extra-life.de/index.html
Additional Material:
http://www.geologyclass.org/cambrian_concepts3.htm
http://www.palaeontologyonline.com/articles/2011/fossil-focus-coal-swamps
en.wikipedia.org/wiki/Rhizodus
en.wikipedia.org/wiki/Hibbertopterus
en.wikipedia.org/wiki/Lepidodendron
en.wikipedia.org/wiki/Coal_forest
en.wikipedia.org/wiki/Carboniferous_rainforest_collapse
EDIT 3.8.19: Why does this keep happening to me? There was a section on Embolomeres suggesting that some where marine, based on information courtesy of paleos.com, but when researching a new video I couldn't find any specific evidence that there were any marine species. Many sources say that the Trematosauroids are the only marine non-amniote tetrapods, so I'm removing the Embolomeri section for now. I'm sure you're devastated.
EDIT 10.3.17: I had a section about Lepospondyls, but it was removed because it turns out the group is probably a paraphyletic collection of reptiliomorphs, and the ones I featured, the aistopods, were found to be basal tetrapods as of earlier this year. Whoops.
Sources/Additional Reading:
http://www.tandfonline.com/doi/full/10.1080/02724634.2010.501445
researchgate.net/publication/213774566_The_origin_of_modern_amphibians_A_re-evaluation?_sg=e0QOGjlCPwVBAE33CPbX3oWk23A79pWKkko1G1G6ZZdZFyMLN4uSyDzQ4JaR5cfuYV_6ARP8HU1bFelVhaCsHe_KxMX5A2W5LgLgnx1N4fKtLA
http://pondside.uchicago.edu/oba/faculty/coates/5.RutCoaQuick2003.pdf
sciencedaily.com/releases/2017/06/170619151534.htm
http://palaeos.com/vertebrates/lepospondyli/index.html
http://palaeos.com/vertebrates/temnospondyli/temnospondyli.html
http://palaeos.com/vertebrates/reptiliomorpha/embolomeri.html
http://palaeos.com/vertebrates/reptiliomorpha/diadectomorpha.html
http://www.prehistoric-wildlife.com/species/a/anthracosaurus.html
http://www.prehistoric-wildlife.com/species/c/casineria.html
http://www.prehistoric-wildlife.com/species/w/westlothiana.html
http://palaeo.gly.bris.ac.uk/Palaeofiles/Fossilgroups/Temnospondyli/Vertebrae.html
en.wikipedia.org/wiki/Pederpes
en.wikipedia.org/wiki/Whatcheeriidae
en.wikipedia.org/wiki/Crassigyrinus
en.wikipedia.org/wiki/Temnospondyli
en.wikipedia.org/wiki/Branchiosaurus
en.wikipedia.org/wiki/Dendrerpeton
en.wikipedia.org/wiki/Lepospondyli
en.wikipedia.org/wiki/Aistopoda
en.wikipedia.org/wiki/Ophiderpeton
en.wikipedia.org/wiki/Embolomeri
en.wikipedia.org/wiki/Reptiliomorpha
en.wikipedia.org/wiki/Archaeothyris
en.wikipedia.org/wiki/Echinerpeton
Just FYI, the exact time frame of the whole insect family tree bit is based off of one study, so the dates of these events may be up in the air.
Sources and Additional Reading:
http://www.sci-news.com/biology/science-family-tree-insects-02264.html
http://www.eartharchives.org/articles/the-biggest-insect-ever-was-a-huge-dragonfly
en.wikipedia.org/wiki/Meganeura
http://palaeoentomolog.ru/New/dictyo.html
en.wikipedia.org/wiki/Palaeodictyopteroidea
http://palaeos.com/metazoa/arthropoda/palaeodictyopteroida/palaeodictyoptera.html
https://www.academia.edu/256387/Fossils_Explained_Trigonotarbids
http://tolweb.org/Acari/2554/1996.12.13
http://tolweb.org/Opiliones
http://www.prehistoric-wildlife.com/species/p/pulmonoscorpius.html
http://www.prehistoric-wildlife.com/species/a/arthropleura.html
books.google.com/books?id=odQmAAAAQBAJ
http://www.nrcresearchpress.com/doi/abs/10.1139/z92-037#.WTrVpIWcHIU
http://www.nature.com/nature/journal/v503/n7475/full/nature12629.html
http://palaeos.com/metazoa/arthropoda/odonatoptera/meganisoptera.html
Sources:
http://petrifiedwoodmuseum.org/SOLycopodiophyta.htm
http://www.geocraft.com/WVFossils/LepidoDwg.html
http://www.geocraft.com/WVFossils/SigillariaDwg.html
http://www.ucmp.berkeley.edu/plants/sphenophyta/sphenofr.html
http://www.ucmp.berkeley.edu/seedplants/seedplantsfr.html
http://www.ohiohistorycentral.org/w/Cordaites_Plant_Fossils?rec=2903
britannica.com/plant/Cordaites
and a bunch of Wikipedia articles.
Sources:
http://palaeos.com/paleozoic/carboniferous/mississippian.htm
en.wikipedia.org/wiki/Hematitida
http://link.springer.com/article/10.1007%2FBF02537462
http://link.springer.com/referenceworkentry/10.1007%2F978-90-481-2639-2_197
http://www.ucmp.berkeley.edu/carboniferous/carboniferous.php
http://www.elasmo-research.org/education/evolution/golden_age.htm
britannica.com/science/Carboniferous-Period
en.wikipedia.org/wiki/Iniopterygiformes
Sources:
http://www.nature.com/nature/journal/v418/n6893/full/nature00824.html
https://repository.si.edu/handle/10088/5994
http://www.evolutionpages.com/pederpes%20finneyae.htm
http://animals.about.com/od/bonyfishes/p/ray-finned-fishes.htm
http://www.prehistoric-wildlife.com/species/o/orthacanthus.html
http://palaeos.com/paleozoic/carboniferous/mississippian.htm
http://palaeos.com/paleozoic/carboniferous/mississippian.htm
http://palaeos.com/paleozoic/carboniferous/carboniferous.htm
http://www.ucmp.berkeley.edu/carboniferous/carboniferous.php
http://forces.si.edu/atmosphere/02_02_06.html
http://www.britannica.com/EBchecked/topic/95185/Carboniferous-Period/69907/Plants
http://paleobiology.si.edu/geotime/main/htmlversion/mississippian3.html
http://taggart.glg.msu.edu/isb200/carbfor.htm
Sources:
http://www.ctmcm.com/Geology/Devonian.pdf
http://en.wikipedia.org/wiki/Late_Devonian_extinction
http://www.nhm.ac.uk/nature-online/life/dinosaurs-other-extinct-creatures/mass-extinctions/late-devonian-mass-extinction/index.html
http://www.devoniantimes.org/opportunity/massExtinction.html
...and maybe a few more I forgot about.
Origins of the coelacanth paper(which was helpful):
http://www.marine.fks.ed.jp/images/coela/sympo/p1-3.pdf
Polish Tetrapod Tracks:
http://www.nature.com/nature/journal/v463/n7277/abs/nature08623.html
The circle, which appears frequently in nature, has evolved over millions of years in different animal lineages with diverse results. This video is a celebration of π day (somewhat late) and the first anniversary of Cambrian Science.
Videos used:
youtube.com/watch?v=bW3sqB7RTIc
youtube.com/watch?v=G7WT81ukHZE
youtube.com/watch?v=0eoEZVThVCk
youtube.com/watch?v=2eLhud7DURQ
youtube.com/watch?v=gLK71-vsi2E
youtube.com/watch?v=_8WbEP25puc
youtube.com/watch?v=wDabUHE73PY
http://faculty.cns.uni.edu/~groves/EHCh14lecturept03.pdf
The Euramerican continent was a merging of what is now North America and Europe. Unlike present day when Europe is a separate continent. Oh wait, it's not.
The trailer for season two of Cambrian Science, which will look at the events of the Silurian and Devonian periods when life in the oceans continued and life on land started to establish itself.
THiS is Their EPIC $tory Of h0pe, RedempTion, anD ROM@Nce. HASHTAG ERMAGERD.
Sources:
www.wikpedia.org
www.sciencedirect.com
tolweb.org
www.gsapubs.org
www.palaeontologie.uni-wuerzburg.de
www.trilobites.info
All of the non-photographs and non-charts in this video are made by me.